How to cite

The OmniMouse dataset builds on experimental data from multiple projects. When using it for scientific purposes, please cite:

the original data source(s) your results depend on and the corresponding paper,
and, if possible, the OmniMouse dataset repository/homepage.

The corresponding paper for each individual experiment is linked from the Dataset Details page. Click any button below to open the BibTeX citation.

OmniMouse Dataset

Dataset DOI: 10.57967/hf/8529

@dataset{fahey2026omnimouse_data,
  author       = {Fahey, Paul G. and Ponder, Kayla and Muhammad, Taliah and
                  Froebe, Rachel and Ntanavara, Lydia and Tan, Zheng H. and
                  Patel, Saumil and Cobos, Erick and Ding, Zhiwei and
                  Fu, Jiakun and Ding, Zhuokun and Tran, Dat and
                  Papadopoulos, Stelios and Wang, Eric Y. and
                  Turishcheva, Polina and Willeke, Konstantin and
                  Papadopoulos, Christos and Yatsenko, Dimitri and
                  Smith, Cameron and Pierzchlewicz, Pawel A. and
                  Olschewski, Tom and Burghardt, Ren{\'e} and
                  Qiu, Yongrong and Sanborn, Sophia and Pitkow, Xaq and
                  Franke, Katrin and Walker, Edgar Y. and
                  Froudarakis, Emmanouil and Reimer, Jacob and
                  Ecker, Alexander S. and Sinz, Fabian H. and
                  Tolias, Andreas S.},
  title        = {{OmniMouse Two-Photon Calcium Imaging Dataset}},
  year         = {2026},
  publisher    = {Hugging Face},
  doi          = {10.57967/hf/8529},
  url          = {https://huggingface.co/datasets/the-enigma-project/omnimouse-dataset},
  note         = {Companion dataset to Willeke et al., OmniMouse, ICLR 2026}
}

Willeke et al., 2026 (OmniMouse)

@inproceedings{willeke2026omnimouse,
  title={OmniMouse: Scaling properties of multi-modal, multi-task Brain Models on 150B Neural Tokens},
  author={Konstantin Friedrich Willeke and Polina Turishcheva and Alex Gilbert and Goirik Chakrabarty and Hasan Atakan Bedel and Paul G. Fahey and Yongrong Qiu and Marissa A. Weis and Michaela Vystr{\v{c}}ilov{\'a} and Taliah Muhammad and Lydia Ntanavara and Rachel E Froebe and Kayla Ponder and Zheng Huan Tan and Emin Orhan and Erick Cobos and Sophia Sanborn and Katrin Franke and Fabian H. Sinz and Alexander S. Ecker and Andreas S. Tolias},
  booktitle={The Fourteenth International Conference on Learning Representations},
  year={2026},
  url={https://openreview.net/forum?id=mEw4lhAn0F}
}

Willeke et al., 2022 (Sensorium 2022)

@misc{willeke2022sensoriumcompetitionpredictinglargescale,
  title={The Sensorium competition on predicting large-scale mouse primary visual cortex activity},
  author={Konstantin F. Willeke and Paul G. Fahey and Mohammad Bashiri and Laura Pede and Max F. Burg and Christoph Blessing and Santiago A. Cadena and Zhiwei Ding and Konstantin-Klemens Lurz and Kayla Ponder and Taliah Muhammad and Saumil S. Patel and Alexander S. Ecker and Andreas S. Tolias and Fabian H. Sinz},
  year={2022},
  eprint={2206.08666},
  archivePrefix={arXiv},
  primaryClass={q-bio.NC},
  url={https://arxiv.org/abs/2206.08666}
}

Turishcheva et al., 2024 (Sensorium 2023)

@misc{turishcheva2024dynamicsensoriumcompetitionpredicting,
  title={The Dynamic Sensorium competition for predicting large-scale mouse visual cortex activity from videos},
  author={Polina Turishcheva and Paul G. Fahey and Laura Hansel and Rachel Froebe and Kayla Ponder and Michaela Vystrčilová and Konstantin F. Willeke and Mohammad Bashiri and Eric Wang and Zhiwei Ding and Andreas S. Tolias and Fabian H. Sinz and Alexander S. Ecker},
  year={2024},
  eprint={2305.19654},
  archivePrefix={arXiv},
  primaryClass={q-bio.NC},
  url={https://arxiv.org/abs/2305.19654}
}

Bae et al., 2025 (MICrONS functional connectomics)

@article{microns2025functional,
  title={Functional connectomics spanning multiple areas of mouse visual cortex},
  journal={Nature},
  volume={640},
  number={8058},
  pages={435--447},
  year={2025},
  publisher={Nature Publishing Group UK London}
}

Ding et al., 2025 (Functional connectomics)

@article{ding2025functional,
  title={Functional connectomics reveals general wiring rule in mouse visual cortex},
  author={Ding, Zhuokun and Fahey, Paul G and Papadopoulos, Stelios and Wang, Eric Y and Celii, Brendan and Papadopoulos, Christos and Chang, Andersen and Kunin, Alexander B and Tran, Dat and Fu, Jiakun and others},
  journal={Nature},
  volume={640},
  number={8058},
  pages={459--469},
  year={2025},
  publisher={Nature Publishing Group UK London}
}

Fahey et al., 2019 (Orientation map)

@article{fahey2019global,
  title={A global map of orientation tuning in mouse visual cortex},
  author={Fahey, Paul G and Muhammad, Taliah and Smith, Cameron and Froudarakis, Emmanouil and Cobos, Erick and Fu, Jiakun and Walker, Edgar Y and Yatsenko, Dimitri and Sinz, Fabian H and Reimer, Jacob and others},
  journal={bioRxiv},
  pages={745323},
  year={2019},
  publisher={Cold Spring Harbor Laboratory}
}

Ding et al., 2026 (Bipartite invariance)

@article{ding2026functional,
  title={Functional bipartite invariance in mouse primary visual cortex receptive fields},
  author={Ding, Zhiwei and Tran, Dat and Ponder, Kayla and Ding, Zhuokun and Froebe, Rachel and Ntanavara, Lydia and Fahey, Paul G and Cobos, Erick and Baroni, Luca and Diamantaki, Maria and others},
  journal={Nature Neuroscience},
  pages={1--13},
  year={2026},
  publisher={Nature Publishing Group US New York}
}

Wang et al., 2023 (Foundation model)

@article{wang2023foundation,
  title   = {Foundation model of neural activity predicts response to new stimulus types},
  author  = {Wang, E.Y. and Fahey, P.G. and Ding, Z. and others},
  journal = {Nature},
  year    = {2025},
  doi     = {10.1038/s41586-025-08829-y}
}